Package: sumSome 1.1.1
Anna Vesely
sumSome: True Discovery Guarantee by Sum-Based Tests
It allows to quickly perform closed testing by sum-based global tests, and construct lower confidence bounds for the TDP, simultaneously over all subsets of hypotheses. As main features, it produces permutation-based simultaneous lower confidence bounds for the proportion of active voxels in clusters for fMRI data, differentially expressed genes in pathways for gene expression data, and significant effects for multiverse analysis. Details may be found in Vesely at al. (2023) < doi:10.1093/jrsssb/qkad019> and Tian at al. (2022) <doi:10.1111/sjos.12614>.
Authors:
sumSome_1.1.1.tar.gz
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sumSome_1.1.1.tgz(r-4.4-emscripten)sumSome_1.1.1.tgz(r-4.3-emscripten)
sumSome.pdf |sumSome.html✨
sumSome/json (API)
NEWS
| # Install 'sumSome' in R: |
| install.packages('sumSome', repos = c('https://annavesely.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/annavesely/sumsome/issues
Last updated 2 months agofrom:ba6e3eacae. Checks:1 OK, 11 ERROR. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 24 2025 |
| R-4.5-win-x86_64 | ERROR | Mar 24 2025 |
| R-4.5-mac-x86_64 | ERROR | Mar 24 2025 |
| R-4.5-mac-aarch64 | ERROR | Mar 24 2025 |
| R-4.5-linux-x86_64 | ERROR | Mar 24 2025 |
| R-4.4-win-x86_64 | ERROR | Mar 24 2025 |
| R-4.4-mac-x86_64 | ERROR | Mar 24 2025 |
| R-4.4-mac-aarch64 | ERROR | Mar 24 2025 |
| R-4.4-linux-x86_64 | ERROR | Mar 24 2025 |
| R-4.3-win-x86_64 | ERROR | Mar 24 2025 |
| R-4.3-mac-x86_64 | ERROR | Mar 24 2025 |
| R-4.3-mac-aarch64 | ERROR | Mar 24 2025 |
Exports:brainAnalysisbrainClustersbrainPvalsbrainScoresdiscoveriesfdpgeneAnalysisgenePvalsgeneScorespimaAnalysissimDatasumPvalssumPvalsParsumStatssumStatsPartdp
Dependencies:ARIbrainFMStablehommelmatrixStatspARIplyrRcppRcppArmadilloRNifti
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| True Discovery Guarantee by Sum-Based Tests | sumSome-package sumSome |
| True Discovery Guarantee for Cluster Analysis of Brain Imaging Data | brainAnalysis |
| Suprathreshold Clusters for Brain Imaging | brainClusters |
| Permutation p-Values for Brain Imaging | brainPvals |
| Permutation t-Scores for Brain Imaging | brainScores |
| True Discovery Guarantee for Pathway Analysis of Gene Expression Data | geneAnalysis |
| Permutation p-Values for Gene Expression | genePvals |
| Permutation t-Scores for Gene Expression | geneScores |
| True discovery guarantee in multiverse analysis | pimaAnalysis |
| Simulating Matrix of Statistics | simData |
| True Discovery Guarantee for p-Value Combinations - Permutation | sumPvals |
| True Discovery Guarantee for p-Value Combinations - Parametric | sumPvalsPar |
| True Discovery Guarantee for Generic Statistics - Permutation | sumStats |
| True Discovery Guarantee for Generic Statistics - Parametric | sumStatsPar |
| True discovery guarantee | discoveries fdp tdp true-discovery-guarantee |